HIBAG (version 1.8.3)

hlaCombineAllele: Combine two datasets of HLA types

Description

Get a subset of HLA types from an object of hlaAlleleClass.

Usage

hlaCombineAllele(H1, H2)

Arguments

H1

the first hlaAlleleClass object

H2

the second hlaAlleleClass object

Value

Return hlaAlleleClass.

See Also

hlaAllele, hlaAlleleSubset

Examples

head(HLA_Type_Table)
dim(HLA_Type_Table)  # 60 13

# make a "hlaAlleleClass" object
hla.id <- "C"
hla <- hlaAllele(HLA_Type_Table$sample.id,
    HLA_Type_Table[, paste(hla.id, ".1", sep="")],
    HLA_Type_Table[, paste(hla.id, ".2", sep="")],
    locus=hla.id, assembly="hg19")
summary(hla)

subhla1 <- hlaAlleleSubset(hla,   1:100)
summary(subhla1)
subhla2 <- hlaAlleleSubset(hla, 201:300)
summary(subhla2)

H <- hlaCombineAllele(subhla1, subhla2)
summary(H)