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Heatplus (version 2.16.0)

Heatmaps with row and/or column covariates and colored clusters

Description

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

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Version

Version

2.16.0

License

GPL (>= 2)

Maintainer

Alexander Ploner

Last Published

February 15th, 2017

Functions in Heatplus (2.16.0)

Setting defaults

Override existing list entries
breakColors

Color palette for (symmetric) breaks
Undocumented functions

Undocumented functions
annHeatmap

Annotated heatmaps
heatmapLayout

Generate a layout for an (annotated) heatmap
plot.annHeatmap

Plotting method for annotated heatmaps
print.annHeatmap

Printing information about annotated heatmaps
BrewerClusterCol

Color scheme for clusters
convAnnData

Converting data frames for display as annotation
regHeatmap

Regular heatmaps with a legend
RGBColVec

Alternative color schemes
doLegend

A simple legend
g2r.colors

Palette from green to red via black
oldPicketplot

Barplots for Several Binary Variables
picketPlot

Display a data frame of annotation information
heatmap_2

Display Data as Heatmap
heatmap_plus

Display an Annotated Heatmap
niceBreaks

Get nice (symmetric) breaks for an interval
oldCutplot.dendrogram

Plot Subtrees of a Dendrogram in Different Colors