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HeteroGGM (version 1.0.1)

Gaussian Graphical Model-Based Heterogeneity Analysis

Description

The goal of this package is to user-friendly realizing Gaussian graphical model-based heterogeneity analysis. Recently, several Gaussian graphical model-based heterogeneity analysis techniques have been developed. A common methodological limitation is that the number of subgroups is assumed to be known a priori, which is not realistic. In a very recent study (Ren et al., 2022), a novel approach based on the penalized fusion technique is developed to fully data-dependently determine the number and structure of subgroups in Gaussian graphical model-based heterogeneity analysis. It opens the door for utilizing the Gaussian graphical model technique in more practical settings. Beyond Ren et al. (2022), more estimations and functions are added, so that the package is self-contained and more comprehensive and can provide ``more direct'' insights to practitioners (with the visualization function). Reference: Ren, M., Zhang S., Zhang Q. and Ma S. (2022). Gaussian Graphical Model-based Heterogeneity Analysis via Penalized Fusion. Biometrics, 78 (2), 524-535.

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Version

Install

install.packages('HeteroGGM')

Monthly Downloads

229

Version

1.0.1

License

GPL-2

Maintainer

Mingyang Ren

Last Published

October 11th, 2023

Functions in HeteroGGM (1.0.1)

GGMPF

GGM-based heterogeneity analysis.
FGGM.refit

Refitting of FGGM
PGGMBC

Penalized GGM-based clustering.
linked_node_names

Indexes the names of all nodes connected to some particular nodes in a subgroup.
Power.law.network

Power law network
example.data

Some example data
plot_network

Visualization of network structures.
genelambda.obo

Generate tuning parameters
FGGM

Fused Gaussian graphical model.
generate.data

Data Generation
summary_network

The summary of the resulting network structures.