Hmisc v4.0-0

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Harrell Miscellaneous

Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, and recoding variables.

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Hmisc

Harrell Miscellaneous

Current Goals

Web Sites

To Do

  • Consider using the haven package for importing SAS, Stata, and SPSS files; haven stores labels as the label attribute of each variable as does Hmisc; it converts date and time variables automatically and allows one to specify a format catalog along with the primary dataset
  • See if the readstata13 package has advantages over the foreign package for Stata file import
  • Consider creating xl.get using the readxl package to read .xls and .xlsx Excel files
  • In impute.transcan, sense if a variable in data is not a factor whereas it was treated as a factor during aregImpute; it should be converted to factor before the line v[sub] <- ... levels(as.integer...)) is run

Functions in Hmisc

Name Description
binconf Confidence Intervals for Binomial Probabilities
addMarginal Add Marginal Observations
approxExtrap Linear Extrapolation
abs.error.pred Indexes of Absolute Prediction Error for Linear Models
biVar Bivariate Summaries Computed Separately by a Series of Predictors
areg Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
bootkm Bootstrap Kaplan-Meier Estimates
bpower Power and Sample Size for Two-Sample Binomial Test
all.is.numeric Check if All Elements in Character Vector are Numeric
aregImpute Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
Cs Character strings from unquoted names
contents Metadata for a Data Frame
capitalize capitalize the first letter of a string
bystats Statistics by Categories
consolidate Element Merging
cpower Power of Cox/log-rank Two-Sample Test
ciapower Power of Interaction Test for Exponential Survival
cnvrt.coords Convert between the 5 different coordinate sytems on a graphical device
bpplot Box-percentile plots
csv.get Read Comma-Separated Text Data Files
data.frame.create.modify.check Tips for Creating, Modifying, and Checking Data Frames
dotchart2 Enhanced Dot Chart
describe Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
cut2 Cut a Numeric Variable into Intervals
dotchart3 Enhanced Version of dotchart Function
discrete Discrete Vector tools
deff Design Effect and Intra-cluster Correlation
dataRep Representativeness of Observations in a Data Set
curveRep Representative Curves
dotchartpl Enhanced Version of dotchart Function for plotly
mhgr Miscellaneous Functions for Epidemiology
event.convert Event Conversion for Time-to-Event Data
ffCompress Transform Data Frame Into a Compact ff Object
errbar Plot Error Bars
Ecdf Empirical Cumulative Distribution Plot
find.matches Find Close Matches
event.history Produces event.history graph for survival data
equalBins Multicolumn Formating
escapeRegex Escapes any characters that would have special meaning in a reqular expression.
event.chart Flexible Event Chart for Time-to-Event Data
ggfreqScatter Frequency Scatterplot
getHdata Download and Install Datasets for Hmisc, rms, and Statistical Modeling
getRs Interact with github rscripts Project
colorFacet Miscellaneous ggplot2 and grid Helper Functions
first.word First Word in a String or Expression
format.df Format a Data Frame or Matrix for LaTeX or HTML
getZip Open a Zip File From a URL.
GiniMd Gini's Mean Difference
format.pval Format P Values
gbayes Gaussian Bayesian Posterior and Predictive Distributions
impute Generic Functions and Methods for Imputation
knitrSet knitr Setup and plotly Service Function
hist.data.frame Histograms for Variables in a Data Frame
hdquantile Harrell-Davis Distribution-Free Quantile Estimator
inc-dec Increment and Decrement
hoeffd Matrix of Hoeffding's D Statistics
histbackback Back to Back Histograms
html Convert an S object to HTML
Hmisc-internal Internal Hmisc functions
labcurve Label Curves, Make Keys, and Interactively Draw Points and Curves
latexTherm Create LaTeX Thermometers and Colored Needles
legendfunctions Legend Creation Functions
list.tree Pretty-print the Structure of a Data Object
makeNstr creates a string that is a repeat of a substring
mApply Apply a Function to Rows of a Matrix or Vector
latexDotchart Enhanced Dot Chart for LaTeX Picture Environment with epic
latexTabular Convert a Data Frame or Matrix to a LaTeX Tabular
Lag Lag a Numeric, Character, or Factor Vector
latex Convert an S object to LaTeX, and Related Utilities
label Label Attribute of an Object
mtitle Margin Titles
multLines Plot Multiple Lines
minor.tick Minor Tick Marks
Misc Miscellaneous Functions
Merge Merge Multiple Data Frames or Data Tables
mgp.axis Draw Axes With Side-Specific mgp Parameters
mChoice Methods for Storing and Analyzing Multiple Choice Variables
mdb.get Read Tables in a Microsoft Access Database
na.delete Row-wise Deletion na.action
na.detail.response Detailed Response Variable Information
prselect Selectively Print Lines of a Text Vector
%nin% Find Matching (or Non-Matching) Elements
na.keep Do-nothing na.action
pstamp Date/Time/Directory Stamp the Current Plot
sasxport.get Enhanced Importing of SAS Transport Files using read.xport
partition Patitions an object into different sets
Save Faciliate Use of save and load to Remote Directories
pc1 First Principal Component
rcorr Matrix of Correlations and P-values
rcorr.cens Rank Correlation for Censored Data
rcspline.plot Plot Restricted Cubic Spline Function
rcspline.restate Re-state Restricted Cubic Spline Function
string.bounding.box Determine Dimensions of Strings
plotCorrPrecision Plot Precision of Estimate of Pearson Correlation Coefficient
plsmo Plot smoothed estimates
samplesize.bin Sample Size for 2-sample Binomial
rMultinom Generate Multinomial Random Variables with Varying Probabilities
smean.sd Compute Summary Statistics on a Vector
solvet solve Function with tol argument
t.test.cluster t-test for Clustered Data
summarize Summarize Scalars or Matrices by Cross-Classification
summary.formula Summarize Data for Making Tables and Plots
tabulr Interface to Tabular Function
trunc.POSIXt return the floor, ceiling, or rounded value of date or time to specified unit.
xy.group Mean x vs. function of y in groups of x
units Units Attribute of a Vector
rcorrp.cens Rank Correlation for Paired Predictors with a Possibly Censored Response, and Integrated Discrimination Index
xYplot xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
rcspline.eval Restricted Cubic Spline Design Matrix
showPsfrag Display image from psfrag LaTeX strings
summaryM Summarize Mixed Data Types vs. Groups
simplifyDims List Simplification
summaryP Multi-way Summary of Proportions
upData Update a Data Frame or Cleanup a Data Frame after Importing
upFirst Change First Letters to Upper Case
string.break.line Break a String into Many Lines at Newlines
summaryRc Graphical Summarization of Continuous Variables Against a Response
summaryS Summarize Multiple Response Variables and Make Multipanel Scatter or Dot Plot
nobsY Compute Number of Observations for Left Hand Side of Formula
nstr Creates a string of arbitry length
popower Power and Sample Size for Ordinal Response
rlegend Special Version of legend for R
print.char.list prints a list of lists in a visually readable format.
rm.boot Bootstrap Repeated Measurements Model
somers2 Somers' Dxy Rank Correlation
spower Simulate Power of 2-Sample Test for Survival under Complex Conditions
num.intercepts Extract number of intercepts
panel.bpplot Box-Percentile Panel Function for Trellis
print.char.matrix Function to print a matrix with stacked cells
redun Redundancy Analysis
prnz Print and Object with its Name
scat1d One-Dimensional Scatter Diagram, Spike Histogram, or Density
reShape Reshape Matrices and Serial Data
stat_plsmo Add a lowess smoother without counfidence bands.
score.binary Score a Series of Binary Variables
tex function for use in graphs that are used with the psfrag package in LaTeX
stata.get Enhanced Importing of STATA Files
transace Additive Regression and Transformations using ace or avas
valueTags Store Discriptive Information About an Object
stringDims String Dimentions
subplot Embed a new plot within an existing plot
wtd.stats Weighted Statistical Estimates
xtfrm.labelled Auxiliary Function Method for Sorting and Ranking
yearDays Get Number of Days in Year or Month
varclus Variable Clustering
sedit Character String Editing and Miscellaneous Character Handling Functions
ynbind Combine Variables in a Matrix
show.pch Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
spss.get Enhanced Importing of SPSS Files
src Source a File from the Current Working Directory
symbol.freq Graphic Representation of a Frequency Table
sys Run Unix or Dos Depending on System
transcan Transformations/Imputations using Canonical Variates
translate Translate Vector or Matrix of Text Strings
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Last month downloads

Details

Date 2016-10-31
License GPL (>= 2)
LazyLoad Yes
URL http://biostat.mc.vanderbilt.edu/Hmisc, https://github.com/harrelfe/Hmisc
NeedsCompilation yes
Packaged 2016-10-31 12:43:34 UTC; harrelfe
Repository CRAN
Date/Publication 2016-11-01 11:27:47

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