INetTool (version 0.1.1)

plotINet: plotINet

Description

The function plots a beginning network and the consensus in one graph with different edge colours: red edges represent edges of the consensus already present in the beginning one, while light blue edges represent new edges constructed from the consensus.

Usage

plotINet(
  adj,
  graph.consensus,
  edge.width = 3,
  vertex.label.cex = 0.5,
  vertex.size = 10,
  edge.curved = 0.2,
  method = "NA",
  ...
)

Value

Union graph beginning and consensus edge coloured, green edges consensus already present in the beginning, blue edges new of the consensus. Community detection of the beggining graph if added.

Arguments

adj

one of the beginning adjacency matrices

graph.consensus

consensus network, output of the consensusNet function

edge.width

the edge width (default 3)

vertex.label.cex

the size of the vertex label (default 0.8)

vertex.size

the size of the vertex (default 10)

edge.curved

to make the edge curved (default 0.2)

method

community detection method to color the nodes one of "walktrap", "edgeBetweenness", "fastGreedy", "louvain", "spinglass", "leadingEigen", "labelProp", "infomap", "optimal" and "leiden" (default no method)

...

other parameter

Examples

data("adjL_data")
con <- consensusNet(adjL_data)
plotINet(adjL_data[[1]], con$graphConsensus)