localnoise

getpeakheights

calculatebasis.gaussian

calculatebasis.emg

nnlslogbarrier

linesearch

postprocess.gaussian

intermediate.gaussian

gaussfun

postprocess.emg

erfc

P3prime

determinemode

dalpha

dsigma

objective

grad

gridsearch

fit.EMG

objective.combine

grad.combine

fit.combine

intermediateemg

peakdetect

fit.gauss

formulacoef2function

simplepeakdetect

tableaveragine

examples_boxes

nnladlogbarrier

linesearchlad

calculatedenoisingbasis.gaussian

calculatedenoisingbasis.emg

Functions not intended to be called directly be the user.

internals

The package provides functionality to extract isotopic peak
patterns from raw mass spectra. This is done by fitting a large set of
template basis functions to the raw spectrum using either nonnegative least
squares or least absolute deviation fittting. The
package offers a flexible function which
tries to estimate model parameters in a way tailored to the peak shapes in
the data. The package also provides functionality to process LCMS runs.

Martin Slawski

IPPD

Isotopic peak pattern deconvolution for Protein Mass
Spectrometry by template matching

internals function

Internal functions

internals: Internal functions

Description

Arguments