ITALICS (version 2.32.0)

fromSnpToQuartet: Function to get from snp to quartet

Description

This function put the smoothing value of each SNP in front of its corresponding quartet in the quartetInfo data.frame.

Usage

fromSnpToQuartet(quartetInfo, profilSNP)

Arguments

quartetInfo

a data frame containing all the quartet values plus there GC content, fragment length and GC content and Quartet effect

profilSNP

a data frame, corresponding to the profileValues argument of a profilCGH object (see GLAD)

Value

• return the data.frame quartetInfo with an additionnal column: "Smoothing" corresponding to the estimated smoothing value.

source

Institut Curie, [e-mail].