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ITALICS (version 2.32.0)

ITALICS

Description

A Method to normalize of Affymetrix GeneChip Human Mapping 100K and 500K set

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Version

Version

2.32.0

License

GPL-2

Maintainer

Guillem Rigaill

Last Published

February 15th, 2017

Functions in ITALICS (2.32.0)

addInfo

add info to quartet annotation
readQuartetCopyNb

Read PM probes of selected quartets and compute the quartet intensity
getConfDat

Elimination of badly predicted probes
getSnpInfo

Function to retrieve the chromosome and the position of each SNP on a given Affymetrix SNP array
fromSnpToQuartet

Function to get from snp to quartet
fromQuartetToSnp

Compute the copy number of each SNP from its quartets intensities
getEffet

Effet
trainITALICS

ITALICS training
getCorrection

Correction
getQuartet

Function to retrieve the information of each quartet
ITALICS

Affymetrix SNP chip normalization
analyseCGH

GLAD analysis
getResidu

Correction
getModel

Regression Model