ITALICS (version 2.32.0)

getConfDat: Elimination of badly predicted probes

Description

This function eliminate badly predicted probes using a regression table and an estimated model given by the function getModel or getBestBICModelLight. Then it computes the corrected intensity.

Usage

getConfDat(confidence, quartetInfo, model)

Arguments

confidence

The confidence interval : 0.95

quartetInfo

A Regression table containing the variables in the model

model

The class lm object given by the function getModel

Value

• A data frame with the corrected intensity. Only goodly predicted probes are taken into account. SNP's with more than 8 badly predicted probes get a NA.

source

Institut Curie, [e-mail].