UTR3TotalCoverage


    an GRanges object. must be the output of <a rd-options="" href="/link/utr3Annotation?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::utr3Annotation">utr3Annotation</a>


utr3


    total coverage of each sample. must be the output of <a rd-options="" href="/link/totalCoverage?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::totalCoverage">totalCoverage</a>


totalCov


  GC compensation vector. Not support yet.


gcCompensation


    mappability compensation vector. Not support yet.


mappabilityCompensation


    the cut-off frequence of FFT smooth.


fft.sm.power


    extract 3UTR coverage from totalCov according and GRanges object utr3.


 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

UTR3TotalCoverage function


    an GRanges object. must be the output of <a rd-options='' href='utr3Annotation'>utr3Annotation</a>



    total coverage of each sample. must be the output of <a rd-options='' href='totalCoverage'>totalCoverage</a>


UTR3TotalCoverage: extract coverage of 3UTR for CP sites prediction

Description

Usage

Arguments

Value