InterVA5 (version 1.1.3)

InterVA5.plot: Plot an individual-level distribution of va probabilities.

Description

The function takes an input of a single va object and produces a summary plot for it.

Usage

InterVA5.plot(
  va,
  type = "bar",
  title = "Top CSMF Distribution",
  min.prob = 0.01,
  ...
)

Arguments

va

A va object

type

An indicator of the type of chart to plot. "pie" for pie chart; "bar" for bar chart.

title

A character string for the title of the CSMF plot.

min.prob

The minimum probability that is to be plotted in bar chart, or to be labeled in pie chart.

...

Arguments to be passed to/from graphic function barplot, pie, and more graphical paramters (see par). They will affect the main title, size and font of labels, and the radius of the pie chart.

See Also

CSMF5

Examples

# NOT RUN {
# }
# NOT RUN {
data(RandomVA5)
# only fit first 20 observations for a quick illustration
RandomVA5 <- RandomVA5[1:20, ]
#' sample.output <- InterVA5(RandomVA5, HIV = "h", Malaria = "v", write = FALSE, 
    directory = tempdir(), filename = "VA5_result", output = "extended", append = FALSE)

## Individual level summary using pie chart
InterVA5.plot(sample.output$VA5[[3]], type = "pie", min.prob = 0.01,
    main = "1st sample VA analysis using pie chart", clockwise = FALSE,
    radius = 0.6, cex = 0.6, cex.main = 0.8)


## Individual level summary using bar chart
InterVA5.plot(sample.output$VA5[[3]], type = "bar", min.prob = 0.01,
    main = "2nd sample VA analysis using bar chart", cex.main = 0.8)
# }
# NOT RUN {
# }