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KODAMA (version 2.4)

Knowledge Discovery by Accuracy Maximization

Description

An unsupervised and semi-supervised learning algorithm that performs feature extraction from noisy and high-dimensional data. It facilitates identification of patterns representing underlying groups on all samples in a data set. Based on Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA. (2017) Bioinformatics and Cacciatore S, Luchinat C, Tenori L. (2014) Proc Natl Acad Sci USA .

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Version

Install

install.packages('KODAMA')

Monthly Downloads

747

Version

2.4

License

GPL (>= 2)

Maintainer

Stefano Cacciatore

Last Published

January 12th, 2023

Functions in KODAMA (2.4)

grid-internal

Internal Grid Functions
core_cpp

Maximization of Cross-Validateed Accuracy Methods
KODAMA.matrix

Knowledge Discovery by Accuracy Maximization
dinisurface

Ulisse Dini Data Set Generator
KODAMA.visualization

Visualization of KODAMA output
USA

State of the Union Data Set
categorical.test

Categorical Information
MetRef

Nuclear Magnetic Resonance Spectra of Urine Samples
knn.kodama

k-Nearest Neighbors Classifier.
loads

Variable Ranking
floyd

Find Shortest Paths Between All Nodes in a Graph
lymphoma

Lymphoma Gene Expression Dataset
mcplot

Evaluation of the Monte Carlo accuracy results
correlation.test

Continuous Information
transformy

Conversion Classification Vector to Matrix
spirals

Spirals Data Set Generator
txtsummary

Median and Coefficient Interval
swissroll

Swiss Roll Data Set Generator
pls.kodama

Partial Least Squares regression.
scaling

Scaling Methods
clinical

Clinical Data of a Cohort of Prostate Cancer Patiens
k.test

K-Test of Statistical Association
continuous.test

Continuous Information
knn.double.cv

Cross-Validation with k-Nearest Neighbors algorithm.
pca

Principal Components Analysis
pls.double.cv

Cross-Validation with PLS-DA.
frequency_matching

Frequency Matching
multi_analysis

Continuous Information
helicoid

Helicoid Data Set Generator
normalization

Normalization Methods