Learn R Programming
⚠️There's a newer version (2.28.0) of this package.Take me there.

LMGene (version 2.24.0)

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays

Description

LMGene package for analysis of microarray data using a linear model and glog data transformation

Copy Link

Version

Monthly Downloads

34

Version

2.24.0

License

LGPL

Maintainer

Blythe DurbinJohnson

Last Published

February 15th, 2017

Functions in LMGene (2.24.0)

norm

Normalization function
plotMeanSD

Plotting function for gene means and standard deviations
tranestAffyProbeLevel

Glog transformation parameter estimation function for probe-level Affymetrix expression data
tranest

Glog transformation parameter estimation function
LMGene

LMGene main function
transeS

Function to apply the glog transform to an expression set.
vlist

Sample experimental/phenotype data for LMGene package
lnorm

Lowess normalization function
genediff

Gene-by-gene and posterior p-value calculation function.
glog

Generalized log transformation function
rowaov

Gene by gene ANOVA function
sample.eS

Sample array data for LMGene
lnormeS

Function to apply lowess normalization to an expression set.
neweS

Coerce a matrix to class ExpressionSet
psmeans

Function to take means of probesets.
pvadjust

P-value adjusting function
sample.ind

Sample probeset index vector
sample.mat

Sample array data for LMGene package