LVSmiRNA (version 1.22.0)

plot-method: Plot of Residual Variance and Array Effect

Description

Plots results from estVC

Usage

"plot"(x,Atransf=c("both","sqrt","log"), abline=c("none","rq"),df=3,proportion=.7, col="black",col.rq="red")

Arguments

x

An object of class RA resulting from estVC.

Atransf

Transformation to apply at Array Effect

abline

Add a line to the plot representing a quantile fit

df

Degrees of freedom of the quantile regression

proportion

Quantile to fit

col

Color for plotting points

col.rq

Color for plotting quantile line

References

Calza et al., 'Normalization of oligonucleotide arrays based on the least variant set of genes', (2008, BMCBioinformatics); Pawitan, Y. 'In All Likelihood: Statistical Modeling and Inference Using Likelihood', (2001, Oxford University Press); Huber, P. J., 'Robust estimation of a location parameter', (1964, Annuas of Mathematical Statistics).

See Also

estVC,rq

Examples

## Not run: 
# 
# # Starting from an EList object called MIR
# data("MIR-spike-in")
# AA <- estVC(MIR,method="joint")
# plot(AA)
#  ## End(Not run)