Calculate formula and mass of LPE
Calculate formula and mass of LPEo
Calculate formula and mass of PC
Calculate formula and mass of glucoceramides
Calculate formula and mass of PIP2
Check intensity rules
Check intensity rules
Calculate formula and mass of LysoPC
Calculate formula and mass of PIP
Calculate formula and mass of TG
Calculate formula and mass of LPEp
Search of chain specific fragments
Calculate formula and mass of LPG
Combine chain fragments that could belong to the same precursor.
Calculate formula and mass of sphingomyelines
Calculate formula and mass of MG
Ceramides database
Calculate formula and mass of sphingoid phosphate bases
Calculate formula and mass of PCo
Calculate formula and mass of LPAo
Calculate formula and mass of PG
Calculate formula and mass of PA
Calculate formula and mass of PIP3
AcylCeramides database
Calculate formula and mass of PS
Adducts table
calculate coelution score between two peaks
Coeluting fragments extraction
Calculate formula and mass of PI
Lipid annotation for an msbatch
Bile Acids (BA) annotation for ESI-
Load LipidMS default data bases
Clustering for MS peaks based on mz or RT.
Calculate formula and mass of PE
Calculate formula and mass of PCp
Cardiolipins database
Confidence Annotation Levels
Acylceramides (AcylCer) annotation for ESI+
Search of class fragments to confirm the lipid class.
Bile acids conjugates database
extract chains composition from a lipid name
Bile acids database
Calculate formula and mass of plasmenyl PE
Calculate formula and mass of sphingoid bases
Calculate formula and mass of plasmanyl PE
Process mzXML files individually: peakpicking and isotope annotation
Process several mzXML files (peakpicking and isotope annotation) and create an
msbatch for batch processing.
Cross the original MS1 peaklist with the annotation results
Customizable lipid DBs creator
DGs database
Align samples from an msbatch
Difference between two carbon:bounds structures
Search for fragments of interest withing a list of coeluting fragments
Annotate isotopes
Total number of carbons and double bounds
Calculate max distance between clusters.
Get formula and neutral mass for annotated compounds
Lipids annotation for ESI-
Phosphocholines (PC) annotation for ESI-
Creation of a database for Cer, CerP, GlcCer and SM
EIC extraction based on previous partitions generated by partitioning
Creation of a database for C.
Creation of a database for Carnitines, CE, FA, HFA, LPL, MG, sphingoid
bases and sphingoid bases phosphate.
Ceramides Phosphate database
Cross different candidates tables to remove false positives.
Plasmenyl Phosphocholines (PCp) annotation for ESI-
find lisnks between MS1 peaks and precursors selected for MS2 in DDA
Write features table based on groups
HFAs database
Find candidate precursor from fullMS function
Carnitines database
Obtain an inclusion list from the annotation results
FAHFAs database
FAs database
Extract peaks from all msobjects in a msbatch.
Phosphoglycerols (PG) annotation for ESI+
Ceramides phosphate (CerP) annotation for ESI+
Lysophosphoethanolamines (LPE) annotation for ESI-
Phosphocholines (PC) annotation for ESI+
Phosphoinositols (PI) annotation for ESI-
Creation of a database for FAHFA, DG and PL.
Ceramides (Cer) annotation for ESI-
Acylceramides (AcylCer) annotation for ESI-
Ceramides (Cer) annotation for ESI+
MS/MS scan extraction of a precursor in DDA
Diacylglycerols (DG) annotation for ESI+
Creation of a database for TG.
Summarize annotation results from an msbatch into the features table
Lysophosphoethanolamines (LPE) annotation for ESI+
PCs database
Index partitions or clusters assigned during alignment.
LPSs database
LPIs database
O-PC database
P-LPE database
Group features from an msbatch
Fill peaks from a grouped msbatch
Phosphoglycerols (PG) annotation for ESI-
Presence or absence of an mz value within a vector of mz values
Plasmenyl Phosphoethanolamines (PEp) annotation for ESI+
Phosphoserines (PS) annotation for ESI-
Targeted isotopes search
Targeted isotopes search for msbatch
Remove low adduct supported candidates to avoid false positives.
Sphingomyelines (SM) annotation for ESI-
Create msbatch for batch processing.
Search of lipid candidates of a certain class
Cholesteryl Esters (CE) annotation for ESI+
P-LPC database
O-LPC database
PSs database
Lysophosphocholines (LPC) annotation for ESI+
Lysophosphoserines (LPS) annotation for ESI-
Lysophosphocholines (LPC) annotation for ESI-
LPGs database
Check matches between chains composition and precursor structures
Read mzXML file and initiate msobject
Ceramides phosphate (CerP) annotation for ESI-
Prepare output for LipidMS annotation functions
Cardiolipines (CL) annotation for ESI-
Acylcarnitine annotation for ESI+
Monoacylglycerol (MG) annotation for ESI+
Plasmenyl Phosphoethanolamines (PEp) annotation for ESI-
Phosphoethanolamines (PE) annotation for ESI+
Neutral losses db for sphingoid bases. It is employed by idCerneg function.
Sphingoid bases phosphate (SphP) annotation for ESI+
P-PE database
PGs database
Plasmanyl Phosphocholines (PCo) annotation for ESI-
FAHFA annotation for ESI-
Fatty Acids (FA) annotation for ESI-
Plasmanyl Phosphoethanolamines (PEo) annotation for ESI-
Plasmanyl Phosphocholines (PCo) annotation for ESI+
Lysophosphoglycerols (LPG) annotation for ESI-
Plasmenyl Phosphocholines (PCp) annotation for ESI+
Lysophosphoinositols (LPI) annotation for ESI-
O-LPA database
Sphingoid bases (Sph) annotation for ESI-
Plot informative peaks for lipid annotation
Sphingoid bases database
LPCs database
Calculate total number of carbons and double bounds of lipid chains
MGs database
PIs database
Triacylglycerols (TG) annotation for ESI+
Sphingoid bases phosphate (SphP) annotation for ESI-
Plasmanyl Phosphoethanolamines (PEo) annotation for ESI+
mz match withing a vector of mz values
peak-pick based on previous EIC clusters generated by clustering
Sphyngomyelines (SM) annotation for ESI+
P-PC database
PEs database
Sphingoid bases (Sph) annotation for ESI-
Lipids annotation for ESI+
Phosphoethanolamines (PE) annotation for ESI-
Phosphoinositols (PI) annotation for ESI+
Join fragments information when several peaks of the same fragment are
coeluting with a unique candidate
O-PE database
TGs database
Plot retention time deviation
LPAs database
Correct RT based on a rtmodel.
LPEs database
TIC for all samples in a msbatch
EIC for all samples in a msbatch
PAs database
SMs database
O-LPE database
agglomarative partitioning for LC-HRMS data based on enviPick algorithm
Sphingoid bases phosphate database
Calculate formula and mass of CL
LipidMS shiny app
Calculate formula and mass of carnitines
Calculate formula and mass of acylceramides
Calculate formula and mass of DG
Calculate formula and mass of ceramides
Calculate formula and mass of LysoPCo
Calculate formula and mass of ceramides phosphate
CEs database
Calculate formula and mass of LysoPCp
Calculate formula and mass of cholesterol esthers
Calculate formula and mass of fatty acids
Calculate formula and mass of hydroxi fatty acids
Calculate formula and mass of LPA
Calculate formula and mass of FAHFA
Calculate formula and mass of LysoPS
Calculate formula and mass of LPI