getInclusionList

Obtain an inclusion list for the identified lipids.

Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.

M Alcoriza-Balaguer

LipidMS

Lipid Annotation for LC-MS/MS DDA or DIA Data

getInclusionList function

<dl><dt>df</dt>
<dd>data frame. Output of identification functions (results table from
an msobject or feature table from an msbatch).</dd>
<dt>dbs</dt>
<dd>list of data bases required for annotation. By default, dbs
contains the required data frames based on the default fragmentation rules.
If these rules are modified, dbs may need to be supplied. See createLipidDB
and assignDB.</dd></dl>

Arguments

M Isabel Alcoriza-Balaguer &lt;maribel_alcoriza@iislafe.es&gt;

Author

Obtain an inclusion list from the annotation results — getInclusionList

<dl>

<dt>df</dt>
<dd>data frame. Output of identification functions (results table from
an msobject or feature table from an msbatch).</dd>


<dt>dbs</dt>
<dd>list of data bases required for annotation. By default, dbs
contains the required data frames based on the default fragmentation rules.
If these rules are modified, dbs may need to be supplied. See createLipidDB
and assignDB.</dd>

</dl>

getInclusionList: Obtain an inclusion list from the annotation results

Description

Usage

Value

Arguments

Author