⚠️There's a newer version (0.14.1) of this package.Take me there.

MALDIquantForeign (version 0.8)

Import/Export routines for MALDIquant

Description

This package reads (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF) and writes (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects.

Copy Link

Version

Install

install.packages('MALDIquantForeign')

Monthly Downloads

458

Version

0.8

License

GPL (>= 3)

Issues

Pull Requests

Stars

Forks

Repository

http://strimmerlab.org/software/maldiquant/ https://github.com/sgibb/MALDIquantForeign/

Maintainer

Sebastian Gibb

Last Published

June 16th, 2014

Functions in MALDIquantForeign (0.8)

.cleanFilename

This function removes spaces and punctuations from filenames.

.composeFilename,AbstractMassObject-method

This method creates a filename for a AbstractMassObject object.

supportedFileFormats

Supported file formats

exportTab,AbstractMassObject-method

Export to text files

export,AbstractMassObject-method

Export files

importBrukerFlex

Import Bruker Daltonics *flex files

importAnalyze

Import Analyze 7.5 files

.base64encode

Converts double to base64 character.

importMzMl

Import mzML files

MALDIquantForeign-package

Import/Export routines for MALDIquant

importMzXml

Import mzXML files

.parseCiphergenXml

Parse Ciphergen XML files.

.mzMlHandlers

Parse mzML files.

importCiphergenXml

Import Ciphergen XML files

exportMsd,MassSpectrum-method

Create a MassSpectrum or a MassPeaks object.

.fileExtension

Determine file extension

exportMzMl,MassSpectrum-method