MALDIquantForeign (version 0.8)

importImzMl: Import imzML files

Description

This function imports files in imzML file format into MassSpectrum-class or MassPeaks-class objects.

Usage

importImzMl(path, ...)

Arguments

path

character, path to directory or file which should be read in.

...

arguments to be passed to import.

Value

• a list of MassSpectrum-class or MassPeaks-class objects (depending on the centroided argument).

References

http://strimmerlab.org/software/maldiquant/, Definition of imzML format: http://www.imzml.org/

See Also

MassSpectrum-class, MassPeaks-class

Examples

library("MALDIquant")
library("MALDIquantForeign")

## get example directory
exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")

## import
s <- importImzMl(exampleDirectory)