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MALDIquantForeign (version 0.9)

Import/Export routines for MALDIquant

Description

This package reads (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF) and writes (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects.

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Version

Install

install.packages('MALDIquantForeign')

Monthly Downloads

458

Version

0.9

License

GPL (>= 3)

Issues

2

Pull Requests

1

Stars

12

Forks

4

Maintainer

Sebastian Gibb

Last Published

August 11th, 2014

Functions in MALDIquantForeign (0.9)

importAnalyze

Import Analyze 7.5 files
MALDIquantForeign-package

Import/Export routines for MALDIquant
.createMassObject

Create a MassSpectrum or a MassPeaks object.
importBrukerFlex

Import Bruker Daltonics *flex files
.mzMlHandlers

Parse mzML files.
importCdf

Import CDF files
importImzMl

Import imzML files
importMzXml

Import mzXML files
.composeFilename,AbstractMassObject-method

This method creates a filename for a AbstractMassObject object.
exportMzMl,MassSpectrum-method

Export to mzML files
exportMsd,MassSpectrum-method

Export to MSD files
importMzMl

Import mzML files
importCiphergenXml

Import Ciphergen XML files
.cleanFilename

This function removes spaces and punctuations from filenames.
.base64encode

Converts double to base64 character.
export,AbstractMassObject-method

Export files
.parseCiphergenXml

Parse Ciphergen XML files.
import

Import files
supportedFileFormats

Supported file formats
importTxt

Import text files
.parseMzMl

Parse mzML files.
exportTab,AbstractMassObject-method

Export to text files
.fileExtension

Determine file extension