MALDIquantForeign (version 0.9)

importMzXml: Import mzXML files

Description

This function imports files in mzXML file format into MassSpectrum-class or MassPeaks-class objects.

Usage

importMzXml(path, ...)

Arguments

path

character, path to directory or file which should be read in.

...

arguments to be passed to readMzXmlFile.

Value

• a list of MassSpectrum-class or MassPeaks-class objects (depending on the centroided argument).

References

http://strimmerlab.org/software/maldiquant/, Definition of mzXML format: http://tools.proteomecenter.org/mzXMLschema.php

See Also

MassSpectrum-class, MassPeaks-class, readMzXmlFile

Examples

library("MALDIquant")
library("MALDIquantForeign")

## get example directory
exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")

## import
s <- importMzXml(exampleDirectory)