mBetatest-package

mBetatest


This package is used to peform multiple beta t-test analyses of real data and gives heatmap of differential expressions of genes or differential splicings and MA plot. The results listing geneid or isoformid, gene name, the other information, t-value, p-value, adjusted p-value, adjusted alpha value, rho, and symb are saved in csv file. 


 package

MBttest-package

MBttest method was developed from beta t-test method of
Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly
2010), DESeq (Anders and Huber 2010) and exact test (Robinson
and Smyth 2007, 2008) and the GLM of McCarthy et al(2012),
MBttest is of high work efficiency,that is, it has high power,
high conservativeness of FDR estimation and high stability.
MBttest is suit- able to transcriptomic data, tag data, SAGE
data (count data) from small samples or a few replicate
libraries. It can be used to identify genes, mRNA isoforms or
tags differentially expressed between two conditions.

YuanDe Tan

MBttest

Multiple Beta t-Tests

MBttest-package function

This package is used to peform multiple beta t-test analyses of real data and gives heatmap of differential expressions of genes or differential splicings and MA plot. The results listing geneid or isoformid, gene name, the other information, t-value, p-value, adjusted p-value, adjusted alpha value, rho, and symb are saved in csv file.

MBttest-package: Multiple Beta t-tests

Description

Arguments

Details

References

See Also

Examples