parse_arguments

testRequired

getValue

getFiles

testAllowed

getListOfKeys

isKeySet

integrate_curve

split_equidistant

plot_segments

get_sign_digits

fill_bins

print_help

setNumberDigits

load_dssp_GROMACS

load_XPM

load_clusters_GROMACS

find_Nth_occurrence

split_GROMACS_atomnames

split_AMBER_atomnames

<p>Functions in <code>MDplot</code> not to be used by the user directly.</p>

internal

MDplot-internal

Provides automatization for plot generation succeeding common molecular dynamics analyses.
This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and
RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as
dihedral angle maps, hydrogen bonds, cluster bar plots and
DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load
GROMOS, GROMACS and AMBER formats, respectively.

Christian Margreitter

MDplot

Visualising Molecular Dynamics Analyses

Chris Oostenbrink

MDplot-internal function

Internal functions for <code>MDplot</code> — MDplot-internal

Internal functions for <code>MDplot</code>

MDplot-internal: Internal functions for `MDplot`

Description

Arguments

Details