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MHTdiscrete (version 1.0.1)

Multiple Hypotheses Testing for Discrete Data

Description

A comprehensive tool for almost all existing multiple testing methods for discrete data. The package also provides some novel multiple testing procedures controlling FWER/FDR for discrete data. Given discrete p-values and their domains, the [method].p.adjust function returns adjusted p-values, which can be used to compare with the nominal significant level alpha and make decisions. For users' convenience, the functions also provide the output option for printing decision rules.

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Version

Install

install.packages('MHTdiscrete')

Monthly Downloads

200

Version

1.0.1

License

GPL (>= 2)

Maintainer

Yalin Zhu yalinzhuregeneroncom

Last Published

December 15th, 2018

Functions in MHTdiscrete (1.0.1)

Tarone.p.adjust

The adjusted p-values for Tarone's single-step FWER controlling procedure.
Roth.p.adjust

The adjusted p-values for Roth's step-up FWER controlling procedure.
getPval

Calculating p-values for discrete data
GTBY.p.adjust

The adjusted p-values for Gilbert-Tarone-BY step-up FDR controlling procedure.
TH.p.adjust

The adjusted p-values for Tarone-Holm step-down FWER controlling procedure.
Sidak.p.adjust

The adjusted p-values for Sidak single-step FWER controlling procedure.
MHoch.p.adjust

The adjusted p-values for Modified Hochberg step-up FWER controlling procedure.
Roth.rej

The number of rejected hypotheses for Roth's step-up FWER controlling procedure.
MHTdiscrete

MHTdiscrete: A package for Multiple Hypotheses Testing for Discrete Data.
MBY.p.adjust

The adjusted p-values for Modified Benjamini-Yekutieli (BY) step-up FDR controlling procedure.
GTBH.p.adjust

The adjusted p-values for Gilbert-Tarone-BH step-up FDR controlling procedure.
MHolm.p.adjust

The adjusted p-values for Modified Holm step-down FWER controlling procedure.
MixBonf.p.adjust

The adjusted p-values for Mixed Bonferroni single-step FWER controlling procedure.
MBonf.p.adjust

The adjusted p-values for Modified Bonferroni single-step FWER controlling procedure.
MBH.p.adjust

The adjusted p-values for Modified Benjamini-Hochberg (BH) step-up FDR controlling procedure.
MBL.p.adjust

The adjusted p-values for Modified Benjamini-Liu (BL) step-down FDR controlling procedure.