MHTdiscrete (version 1.0.1)

MBY.p.adjust: The adjusted p-values for Modified Benjamini-Yekutieli (BY) step-up FDR controlling procedure.

Description

The function for calculating the adjusted p-values based on original available p-values and all attaianble p-values.

Usage

MBY.p.adjust(p, p.set, alpha, make.decision)

Arguments

p

numeric vector of p-values (possibly with NAs). Any other R is coerced by as.numeric. Same as in p.adjust.

p.set

a list of numeric vectors, where each vector is the vector of all attainable p-values containing the available p-value for the corresponding hypothesis.

alpha

significant level used to compare with adjusted p-values to make decisions, the default value is 0.05.

make.decision

logical; if TRUE, then the output include the decision rules compared adjusted p-values with significant level \(\alpha\)

Value

A numeric vector of the adjusted p-values (of the same length as p).

References

Benjamini, Y., and Yekutieli, D. (2001). The control of the false discovery rate in multiple testing under dependency. Annals of Statistics, 29: 1165-1188.

See Also

MBH.p.adjust, MBL.p.adjust

Examples

# NOT RUN {
p <- c(pbinom(1,8,0.5),pbinom(1,5,0.75),pbinom(1,6,0.6))
p.set <-list(pbinom(0:8,8,0.5),pbinom(0:5,5,0.75),pbinom(0:6,6,0.6))
MBY.p.adjust(p,p.set)
# }