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MHTmult (version 0.1.0)

Multiple Hypotheses Testing for Multiple Families/Groups Structure

Description

A Comprehensive tool for almost all existing multiple testing methods for multiple families. The package summarizes the existing methods for multiple families multiple testing procedures (MTPs) such as double FDR, group Benjamini-Hochberg (GBH) procedure and average FDR controlling procedure. The package also provides some novel multiple testing procedures using selective inference idea.

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Version

Install

install.packages('MHTmult')

Monthly Downloads

147

Version

0.1.0

License

GPL (>= 2)

Maintainer

Yalin Zhu yalinzhuregeneroncom

Last Published

May 1st, 2017

Functions in MHTmult (0.1.0)

gbonf.p.adjust

Adjusted P-Values for the Generalized Bonferroni Procedure Controlling k-FWER
gsidak.cv

Critical Value for the generalized Sidak Procedure Controlling k-FWER
GBH.p.adjust

Adjusted P-values for the Group BH Procedure
avgFDR.p.adjust

Adjusted P-Values for Benjamini & Bogomolov (2014) BH-q BH-Rq/m Procedure
DFDR.p.adjust

Adjusted P-Values for the Double FDR Procedure
DFDR2.p.adjust

Adjusted P-Values for the Modified Double FDR Procedure
gsidak.p.adjust

Adjusted P-Values for the Generalized Sidak Procedure Controlling k-FWER
select.thres

Selecting Threshold for cFDR Controlling Procedures
cFDR.cp.adjust

Adjusted Conditional P-values for Two-stage cFDR Controlling Procedures
gbonf.cv

Critical Value for the generalized Bonferroni Procedure Controlling k-FWER