select.thres: Selecting Threshold for cFDR Controlling Procedures
Description
Given the structural p-values, choose a selecting method for controlling generalized familywise error rate or false discovery rate across families, and a combining mehtod, returns a vector of thresholds for the first stage of cFDR controlling procedures.
the structural p-values, the type should be "list".
select.method
global p-value selecting methods. For generalized FWER controlling, k-Bonferroni or k-Sidak procedures can be used; for FDR controlling, BH procedure can be used.
comb.method
p-value combining methods including "Fisher", "Stouffer", and "minP" combining methods.
alpha
significant level for selecting significant families in the first stage. The default value is 0.05.
k
number of allowed type 1 errors in k-FWER controls.
Value
A list of the adjusted conditional p-values, a list of NULL means the family is not selected to do the test in the second stage.