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MINTplates (version 1.0.1)

Encode "License-Plates" from Sequences and Decode Them Back

Description

It can be used to create/encode molecular "license-plates" from sequences and to also decode the "license-plates" back to sequences. While initially created for transfer RNA-derived small fragments (tRFs), this tool can be used for any genomic sequences including but not limited to: tRFs, microRNAs, etc. The detailed information can reference to Pliatsika V, Loher P, Telonis AG, Rigoutsos I (2016) . It can also be used to annotate tRFs. The detailed information can reference to Loher P, Telonis AG, Rigoutsos I (2017) .

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Version

Install

install.packages('MINTplates')

Monthly Downloads

195

Version

1.0.1

License

GPL (>= 2)

Maintainer

Shangliang Zhong

Last Published

September 3rd, 2021

Functions in MINTplates (1.0.1)

annotate_tRF

Annotate a tRF sequence
deseqs

Decode license-plates
source_tRNA2

Obtain the tRNA sources of tRFs
source_tRNA

Obtain the tRNA source of a tRF
enseqs

Encode sequences
tRFtype

Obtain the type of tRFs
exclusive

Determine whether the tRFs are exclusive to tRNA space