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MLP (version 1.14.0)

MLP

Description

Mean Log P Analysis

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Version

Version

1.14.0

License

GPL-3

Maintainer

Tobias Verbeke

Last Published

February 15th, 2017

Functions in MLP (1.14.0)

plotGOgraph

Graphical Representation of GO Based MLP Results
MLP

This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
mlpBarplot

Draw a Barplot for MLP Results
plot.MLP

Plot the Results of an MLP Run
plotGeneSetSignificance

Plot the Significance for the Genes of a Given Gene Set
addGeneSetDescription

Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
getGeneSets

Prepare Pathway Data for the MLP Function