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MLP (version 1.14.0)
MLP
Description
Mean Log P Analysis
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1.20.0
1.18.0
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1.14.0
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Version
1.14.0
License
GPL-3
Maintainer
Tobias Verbeke
Last Published
February 27th, 2013
Functions in MLP (1.14.0)
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plotGOgraph
Graphical Representation of GO Based MLP Results
MLP
This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
mlpBarplot
Draw a Barplot for MLP Results
plot.MLP
Plot the Results of an MLP Run
plotGeneSetSignificance
Plot the Significance for the Genes of a Given Gene Set
addGeneSetDescription
Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
getGeneSets
Prepare Pathway Data for the MLP Function