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MLP (version 1.20.0)

MLP

Description

Mean Log P Analysis

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Version

Version

1.20.0

License

GPL-3

Maintainer

Tobias Verbeke

Last Published

February 15th, 2017

Functions in MLP (1.20.0)

mlpBarplot

Draw a Barplot for MLP Results
getGeneSets

Prepare Pathway Data for the MLP Function
plotGOgraph

Graphical Representation of GO Based MLP Results
plot.MLP

Plot the Results of an MLP Run
MLP

This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
addGeneSetDescription

Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
plotGeneSetSignificance

Plot the Significance for the Genes of a Given Gene Set