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MLP (version 1.20.0)
MLP
Description
Mean Log P Analysis
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Version
Version
1.20.0
1.18.0
1.16.0
1.14.0
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Version
1.20.0
License
GPL-3
Maintainer
Tobias Verbeke
Last Published
February 27th, 2013
Functions in MLP (1.20.0)
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mlpBarplot
Draw a Barplot for MLP Results
getGeneSets
Prepare Pathway Data for the MLP Function
plotGOgraph
Graphical Representation of GO Based MLP Results
plot.MLP
Plot the Results of an MLP Run
MLP
This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
addGeneSetDescription
Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
plotGeneSetSignificance
Plot the Significance for the Genes of a Given Gene Set