addGeneSetDescription

object of class 'MLP' as produced by the
  'MLP' function

object

source to be used to construct the
  list of pathway categories; for public data sources, the
  user can specify a string (one of 'GOBP', 'GOMF', 'GOCC',
  'KEGG' or 'REACTOME') and BioC packages will be used to
  construct the list of pathway categories; for non-public
  data sources, the user can pass the pathway data as a
  dataframe with (at least) the following four columns:
  PATHWAYID, TAXID, PATHWAYNAME and GENEID. It is assumed
  all columns are of type character. The 'geneSetSource'
  argument should be the same as the argument provided to
  the getGeneSets function; defaults to NULL

geneSetSource


  Utility function which adds the biological description of
  the gene sets as a column to the return value of the MLP
  function (data frame)


Tobias Verbeke

addGeneSetDescription function

Utility function which adds the biological description of
  the gene sets as a column to the return value of the MLP
  function (data frame)

addGeneSetDescription: Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)

Description

Usage

Arguments

Value

See Also