MPFE (version 1.8.0)

MPFE-package: MPFE

Description

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and sequencing error rate.

Details

ll{ Package: MPFE Type: Package License: GPL(>=3) } The main component of this package is the function estimatePatterns, which reads a table of read counts of bisulphite sequencing data for a given amplicon and generates a table and plot of the estimated distribution over methylation patterns.

Examples

data(patternsExample)
  estimates <- estimatePatterns(patternsExample, epsilon=0.02, eta=0.01)
  estimates
  plotPatterns(estimates[[2]])