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MPFE (version 1.8.0)

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Description

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

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Version

Version

1.8.0

License

GPL (>= 3)

Maintainer

Conrad Burden

Last Published

February 15th, 2017

Functions in MPFE (1.8.0)

plotPatterns

Plot methylation pattern distribution
patternMap

Plot a representation of the patterns and their frequencies
MPFE-package

MPFE
patternsExample

patternsExample
estimatePatterns

Estimate distribution of methylation patterns