patternsExample


   A data frame which contains a column of methylation patterns and two columns
   of counts. This data was obtained as described in 
   Lyko, F., Forest, S., Kucharski, R., Wolf, S., Falckenhayn, C., 
   and Maleszka, R. (2010). The honey bee epigenomes: differential methylation of brain DNA in 
   queens and workers. PLoS Biol, 8(11), e1000506.


Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Conrad Burden

MPFE

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

patternsExample function

This data frame contains the following columns:
    <dl>
      <dt>mPattern</dt><dd>methylation patterns</dd> <dt>k1</dt><dd>first column of counts</dd> <dt>k2</dt><dd>second column of counts</dd> </dl> 

Format

A data frame which contains a column of methylation patterns and two columns
   of counts. This data was obtained as described in 
   Lyko, F., Forest, S., Kucharski, R., Wolf, S., Falckenhayn, C., 
   and Maleszka, R. (2010). The honey bee epigenomes: differential methylation of brain DNA in 
   queens and workers. PLoS Biol, 8(11), e1000506.

patternsExample: patternsExample

Description

Usage

Arguments

Format