Mirsynergy (version 1.8.1)

plot_modules: Plot module assignments.

Description

Plot as network graphical view of the output from mirsynergy V. NB: small network only.

Usage

plot_modules(V, W, H, legend.pos = "topright", ...)

Arguments

V

Outputs from mirsynergy

W

An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA.

H

An N by N edge weight matrix containing the binary interaction among the N mRNA (genes).

legend.pos

Specify legend position

...

Other parameters passed to plot

Details

Each node will be coloured by the modules they belong to. If a node belongs to multiple modules, it will be coloured differently based on the exact combination of the module indexes. The legend displays the corresponding colours and module assignments.

Examples

load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))

plot_modules(V,W,H)