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Mirsynergy (version 1.8.1)

Mirsynergy

Description

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

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Version

Version

1.8.1

License

GPL-2

Maintainer

Yue Li

Last Published

February 15th, 2017

Functions in Mirsynergy (1.8.1)

plot_modules

Plot module assignments.
tcga_brca_testdata

Breast cancer expression test data from TCGA
tabular_module

Generate tabulated module assignments and nodes for input to Cystoscape.
Mirsynergy-package

Mirsynergy: detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.
mirsynergy

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion
toy_modules

Test data of 20 mRNA and 20 miRNA.
summary_modules

Return summary information of the formed modules
print_modules2

Print basic information of the formed modules
plot_module_summary

Plot module statistics