tabular_module


Output from <code><a rd-options="" href="/link/mirsynergy?package=Mirsynergy&version=1.8.1" data-mini-rdoc="Mirsynergy::mirsynergy">mirsynergy</a></code>.



An N by M edge weight matrix containing interaction strength between N mRNA and 
M miRNA.



An N by N edge weight matrix containing the binary interaction among the N mRNA 
(genes).



Path to save the nodes and edges files.


outdir


Generate tabulated module assignments and nodes for input to Cystoscape.


Detect synergistic miRNA regulatory modules by overlapping
neighbourhood expansion.

Yue Li

Mirsynergy

tabular_module function

Output from <code><a href="mirsynergy" rd-options="">mirsynergy</a></code>.

An N by M edge weight matrix containing interaction strength between N mRNA and 
M miRNA.

An N by N edge weight matrix containing the binary interaction among the N mRNA 
(genes).

Generate tabulated module assignments and nodes for input to Cystoscape.

data.frame containing edges in each indexed module. Each edge (row)
 contain the edge weights, the edge type (MMI or GGI), and which module they 
 belong to.

nodes

data.frame containing nodes in each indexed module. Each node (row)
 contain the node name, type (mRNA/miRNA), and which module they belong to.

tabular_module: Generate tabulated module assignments and nodes for input to Cystoscape.

Description

Usage

Arguments

Value

Examples