MoonFinder (version 1.0.3)

moduleMappingID: moduleMappingID

Description

Map protein ID for a list of modules.

Usage

moduleMappingID(inputList, ID1 = "UNIPROT", ID2 = "SYMBOL", thdMS = 5)

Arguments

inputList

a list of modules with proteins in ID1.

ID1

ID type of proteins of the input moduels.

ID2

ID type of protiens of the output moduels.

thdMS

mimimum module size.

Value

outputList

a list of modules with proteins in ID2.

References

MoonFinder: a framework for the identification of moonlighting non-coding RNAs.

Examples

# NOT RUN {
m1 = c("Q15021", "Q9BPX3", "Q15003", "O95347", "Q9NTJ3")
m2 = c("Q92828", "Q13227", "O15379", "O75376", "O60907", "Q9BZK7")
m3= c("P61160", "P61158", "O15143", "O15144", "O15145", "P59998", "O15511")
uniprotModuleList = list(m1,m2,m3)
symbolModuleList = moduleMappingID(uniprotModuleList)
names(symbolModuleList) = paste0("M",1:length(symbolModuleList))
head(symbolModuleList)
# }