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MoonFinder (version 1.0.3)

Identify Moonlighting ncRNAs

Description

Identify moonlighting non-coding RNAs at the genome level based on the functional annotation and interactome data of ncRNAs and proteins. MoonFinder provides an extensive framework for the detection of protein modules and establishment of RNA-module associations.

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Version

Install

install.packages('MoonFinder')

Monthly Downloads

14

Version

1.0.3

License

GPL-2

Maintainer

Lixin Cheng

Last Published

October 26th, 2019

Functions in MoonFinder (1.0.3)

simMatBP.Jiang

a semantic similarity (Jiang) matrix
simMatBP.Lin

a semantic similarity (Lin) matrix
ppi

ppi
pcdqModuleList

pcdqModuleList
simMatBP.Rel

a semantic similarity (Rel) matrix
simMatBP.Wang

a semantic similarity (Wang) matrix~
simMatBP.Resnik

a semantic similarity (Resnik) matrix
uniGene

Background gene symbols
rna2module

RNA-module association matrix
rna2protein

rna2protein
corumModuleList

modules from CORUM
rna2mod

rna2mod
predModuleList

predicted modules
moduleCombiding

Combine modules from different resources.
SDI

Shannon diversity index
moduleMappingID

moduleMappingID
MoonFinder-package

MoonFinder
moduleFunctionComparing

Compare functions of target modules
combinedModuleList

a list of combined modules
moduleHeatmap

moduleHeatmap
moduleList

ncRNA target moudles
moonlightingCoefficient

moonlightingCoefficient