Bin2MultiSV

: A tab separated file with the following format (with no header)
Contrast SampleID PathtoRDbinFile
Treat Sample1 ~/Sample1.WindowRD-1000.count

CfgFile

MultiSV is an R package for identification of structural
variations in multiple populations based on whole genome resequencing. It
fits linear mixed model and identifies structural variations in multiple
populations using whole genome sequencing data. It could also be
manipulated to use on RNA-seq data for differential gene expression
(implementation in future releases). Main steps for analysis include
generating read depth in bins using ComputeBinCounts. conversion of bins to
MultiSV format using Bin2MultiSV. Finally, identification of structural
variations using CallMultiSV.

Khurram Maqbool

MultiSV

MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing

Bin2MultiSV function

: A tab separated file with the following format (with no header)


Contrast            SampleID            PathtoRDbinFile


Treat                Sample1                ~/Sample1.WindowRD-1000.count

Bin2MultiSV: Read data using configuration file

Description

Usage

Arguments

Value

See Also

Examples