MultiSVData


The data set is read depth (RD) from six domestic populations including ugc355, ugc356,
ugc357, ugc358, ugc376, ugc377 and one wild (WB) population of pigs (SS10.2).
The reads for the populations are available from SRA accession number SRA057461.
RD from each population is in 1kb bins obtained after aligning the reads
from each population to SS10.2 reference genome assembly.


population

duplication

Deletion

MultiSV

MultiSV is an R package for identification of structural
variations in multiple populations based on whole genome resequencing. It
fits linear mixed model and identifies structural variations in multiple
populations using whole genome sequencing data. It could also be
manipulated to use on RNA-seq data for differential gene expression
(implementation in future releases). Main steps for analysis include
generating read depth in bins using ComputeBinCounts. conversion of bins to
MultiSV format using Bin2MultiSV. Finally, identification of structural
variations using CallMultiSV.

MultiSVData: RD Data

Description

Arguments

References