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NAM (version 1.3.2)

Nested Association Mapping Analysis

Description

Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.

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Version

Install

install.packages('NAM')

Monthly Downloads

365

Version

1.3.2

License

GPL-3

Maintainer

Alencar Xavier

Last Published

May 3rd, 2015

Functions in NAM (1.3.2)

REML

Restricted Maximum Likelihood
Reference

Changing the Reference Genotype
SNP h2

SNP heritability
Dataset

Tetra-seed Pods
SNP QC

SNP Quality Control
Internals

Internal functions
NAM-package

Nested Association Mapping Analysis
BGS

Bayesian Gibbs Sampler
Fst

Fixation Index
GWAS

Empirical Bayes Genome Wide Association Mapping
Duplicates

Genotype Duplicates
Report

GWAS Report