NAM (version 1.4.2)

Internals: Internal functions

Description

Complimentary statistics and functions written in C++ to speed up $gwas$, $gibbs$ and $wgr$.

Examples

# Forward gen imputation
data(tpod)
fast.impute.gen = markov(gen,chr)

# A matrix
PedMat()

# Pairwise LD
ld = LD(gen[,1:3])
ld = LD(gen[,1:10])
heatmap(ld$r2)

# Spatial correlation kernel
covar()

# Genetic distance
round(Gdist(gen[1:10,],method=1),2)