Learn R Programming
⚠️There's a newer version (1.7.3) of this package.Take me there.

NAM (version 1.4.2)

Nested Association Mapping Analysis

Description

Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.

Copy Link

Version

Install

install.packages('NAM')

Monthly Downloads

409

Version

1.4.2

License

GPL-3

Maintainer

Alencar Xavier

Last Published

November 20th, 2015

Functions in NAM (1.4.2)

SNP H2

SNP heritability
GWAS

Empirical Bayes Genome Wide Association Mapping
BGS

Bayesian Gibbs Sampler
Duplicates

Genotype Duplicates
WGR

Whole-genome Regression
Reference

Changing the Reference Genotype
Manhattan

Manhattan plot for Association Studies
NAM-package

Nested Association Mapping Analysis
Dataset

Tetra-seed Pods
Fst

Fixation Index
Internals

Internal functions
SNP QC

SNP Quality Control
REML

Restricted Maximum Likelihood