Free Access Week - Data Engineering + BI
Data Engineering and BI courses are free this week!
Free Access Week - Jun 2-8
Learn R Programming
⚠️There's a newer version (1.7.3) of this package.Take me there.

NAM (version 1.4.6)

Nested Association Mapping Analysis

Description

Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, population genetics analysis, solving mixed models and finding variance components through REML and Gibbs sampling.

Copy Link

Version

Install

install.packages('NAM')

Monthly Downloads

365

Version

1.4.6

License

GPL-3

Maintainer

Alencar Xavier

Last Published

August 8th, 2016

Functions in NAM (1.4.6)

Duplicates

Manage Duplicated Genotypes
FST

Fixation Index
SNP QC

SNP Quality Control
Dataset

Tetra-seed Pods
NAM-package

Nested Association Mapping Analysis
Reference

Changing the Reference Genotype
SNP H2

SNP heritability
BMM

Bayesian Mixed Model
Manhattan

Manhattan plot for Association Studies
Internals

Internal functions
REML

Restricted Maximum Likelihood