Learn R Programming

⚠️There's a newer version (1.7.3) of this package.Take me there.

NAM (version 1.5.3)

Nested Association Mapping

Description

Designed for association studies in nested association mapping (NAM) panels, also handling experimental and random panels. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

Copy Link

Version

Install

install.packages('NAM')

Monthly Downloads

409

Version

1.5.3

License

GPL-3

Maintainer

Alencar Xavier

Last Published

August 15th, 2017

Functions in NAM (1.5.3)

FST

Fixation Index
Internals

Internal functions
Manhattan

Manhattan plot for Association Studies
NAM-package

Nested Association Mapping
Dataset 2

Multi-environmental trial
Reference

Changing the Reference Genotype
GWAS

Empirical Bayes Genome Wide Association Mapping
Duplicates

Manage Duplicated Genotypes
MLM Gibbs

Bayesian Mixed Model
WGR

Whole-genome Regression
MLM REML

Restricted Maximum Likelihood
SNP H2

SNP heritability
MLM Trials

Genomic mixed model
SNP QC

SNP Quality Control
Dataset 1

Tetra-seed Pods