Designed for association studies in nested association mapping (NAM) panels, also handling experimental and random panels. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
| Package: | NAM |
| Type: | Package |
| Version: | 1.5.3 |
| Date: | 2017-08-15 |
| License: | GPL-3 |
Package include functions to perform association analysis (gwas, gwas2, gwas3), meta-gwas (gwasGE, meta3), solve mixed models (gibbs, reml), genomic prediction (wgr, gmm), populations genetic analysis (Fst, Gdist, LD), data quality control (snpQC, snpH2, markov) and more.