char2int.fast

the global network object, pre-created using <code><a rd-options="" href="/link/import.net?package=NEArender&version=1.5" data-mini-rdoc="NEArender::import.net">import.net</a></code>

net.list

AGS or FGS object that lists members of each individual AGS/FGS, pre-created using <code><a rd-options="" href="/link/samples2ags?package=NEArender&version=1.5" data-mini-rdoc="NEArender::samples2ags">samples2ags</a></code>

gs.list.1

FGS or AGS object that lists members of each individual FGS/AGS, pre-created using <code><a rd-options="" href="/link/samples2ags?package=NEArender&version=1.5" data-mini-rdoc="NEArender::samples2ags">samples2ags</a></code>

gs.list.2

The number of CPU cores to be used for the step "Counting actual network links" (the other steps are sufficiently fast). The option is not supported on Windows.

Parallelize

This function reads input list objects and maps unique numbers to each member in the network/ genesets.

internal

Performs network enrichment analysis against functional gene sets.
Benchmarks networks. Renders raw gene profile matrices of dimensionality "N genes
x N samples" into the space of gene set (typically pathway) enrichment scores of
dimensionality "N pathways x N samples".

Ashwini Jeggari

NEArender

Network Enrichment Analysis

Andrey Alexeyenko

char2int.fast function

the global network object, pre-created using <code><a rd-options='' href='import.net'>import.net</a></code>

AGS or FGS object that lists members of each individual AGS/FGS, pre-created using <code><a rd-options='' href='samples2ags'>samples2ags</a></code>

FGS or AGS object that lists members of each individual FGS/AGS, pre-created using <code><a rd-options='' href='samples2ags'>samples2ags</a></code>

char2int.fast: char2int function

Description

Usage

Arguments

See Also