process.SampleNormalization

SampleNormalization.process

process,SampleNormalization-method

Additional arguments passed to
     <code><a href="/link/normalizeFragmentLength?package=NSA&version=0.0.31&to=aroma.light" rd-options="aroma.light" data-mini-rdoc="aroma.light::normalizeFragmentLength">normalizeFragmentLength</a></code> (only for advanced users).

Index vector indicating which samples to process.

arrays

If <code><a href="/link/TRUE?package=NSA&version=0.0.31&to=base%3Alogical" rd-options="base:logical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, data already normalized is re-normalized,
       otherwise not.

force

See <code><a href="/link/Verbose?package=NSA&version=0.0.31&to=R.utils" rd-options="R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose

Finds normal regions within tumoral samples.

methods

internal

Post-normalization of total copy-number estimates.

process.SampleNormalization: Finds normal regions within tumoral samples

Description

Usage

Arguments

Value

See Also