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NanoStringNorm (version 1.0.0)
Normalize NanoString miRNA and mRNA data
Description
The function is used to Normalize Nanostring data
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Install
install.packages('NanoStringNorm')
Monthly Downloads
296
Version
1.0.0
License
GPL-2
Maintainer
Daryl Waggott
Last Published
September 16th, 2011
Functions in NanoStringNorm (1.0.0)
Search functions
get.gene.summary.stats
get.gene.summary.stats
get.ttest.and.foldchange
get.ttest.and.foldchange
probe.correction.factor
probe.correction.factor
sample.content.normalization
sample.content.normalization
NanoStringNorm-package
A set of functions for Normalization of Nanostring miRNA and RNA expression levels. Currently, only one function "NanoStringNorm" is used for all combinations of Normalization.
NanoString
An rda file storing NanoString example datasets. Curreintly, a data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
get.geo.mean
get.geo.mean
get.beta.se.and.p
get.beta.se.and.p
get.sample.summary.stats
get.sample.summary.stats
background.normalization
background.normalization
get.batch.effects
get.batch.effects
Plot.NanoStringNorm
Plot.NanoStringNorm
NanoStringNorm
NanoStringNorm
predict.concentration
predict.concentration
code.count.normalization
code.count.normalization
output.formatting
output.formatting
get.mean.sd.and.cv
get.mean.sd.and.cv
other.normalization
other.normalization
get.trait.summary.stats
get.trait.summary.stats
NanoString.mRNA
A data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.