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NanoStringNorm (version 1.0.0)

Normalize NanoString miRNA and mRNA data

Description

The function is used to Normalize Nanostring data

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Version

Install

install.packages('NanoStringNorm')

Monthly Downloads

12

Version

1.0.0

License

GPL-2

Maintainer

Daryl Waggott

Last Published

September 16th, 2011

Functions in NanoStringNorm (1.0.0)

get.gene.summary.stats

get.gene.summary.stats
get.ttest.and.foldchange

get.ttest.and.foldchange
probe.correction.factor

probe.correction.factor
sample.content.normalization

sample.content.normalization
NanoStringNorm-package

A set of functions for Normalization of Nanostring miRNA and RNA expression levels. Currently, only one function "NanoStringNorm" is used for all combinations of Normalization.
NanoString

An rda file storing NanoString example datasets. Curreintly, a data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
get.geo.mean

get.geo.mean
get.beta.se.and.p

get.beta.se.and.p
get.sample.summary.stats

get.sample.summary.stats
background.normalization

background.normalization
get.batch.effects

get.batch.effects
Plot.NanoStringNorm

Plot.NanoStringNorm
NanoStringNorm

NanoStringNorm
predict.concentration

predict.concentration
code.count.normalization

code.count.normalization
output.formatting

output.formatting
get.mean.sd.and.cv

get.mean.sd.and.cv
other.normalization

other.normalization
get.trait.summary.stats

get.trait.summary.stats
NanoString.mRNA

A data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.