bkRNA18_factors

Please refer to the file /inst/doc/readme.pdf.

datasets

It provides a framework and a fast and simple way for researchers to evaluate methods (particularly some data-driven methods or their own methods) and then select a best one for data normalization in the gene expression analysis, based on the consistency of metrics and the consistency of datasets.
Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Deshui Yu, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan and Shan Gao (2018) <doi:10.1101/251140>.

Shan Gao

NormExpression

Normalize Gene Expression Data using Evaluated Methods

bkRNA18_factors function

A data frame with 18 observations on the following 13 variables.<dl>
 <dt><code>HG7</code></dt>
<dd>a numeric vector</dd> <dt><code>ERCC</code></dt>
<dd>a numeric vector</dd> <dt><code>TN</code></dt>
<dd>a numeric vector</dd> <dt><code>TC</code></dt>
<dd>a numeric vector</dd> <dt><code>CR</code></dt>
<dd>a numeric vector</dd> <dt><code>NR</code></dt>
<dd>a numeric vector</dd> <dt><code>DESeq</code></dt>
<dd>a numeric vector</dd> <dt><code>UQ</code></dt>
<dd>a numeric vector</dd> <dt><code>TMM</code></dt>
<dd>a numeric vector</dd> <dt><code>TU</code></dt>
<dd>a numeric vector</dd> <dt><code>NCS</code></dt>
<dd>a numeric vector</dd> <dt><code>ES</code></dt>
<dd>a numeric vector</dd> <dt><code>GAPDH</code></dt>
<dd>a numeric vector</dd> 
</dl>

Format

bkRNA18_factors — bkRNA18_factors

A data frame with 18 observations on the following 13 variables.<dl>
 <dt><code>HG7</code></dt>
<dd>a numeric vector</dd>

 <dt><code>ERCC</code></dt>
<dd>a numeric vector</dd>

 <dt><code>TN</code></dt>
<dd>a numeric vector</dd>

 <dt><code>TC</code></dt>
<dd>a numeric vector</dd>

 <dt><code>CR</code></dt>
<dd>a numeric vector</dd>

 <dt><code>NR</code></dt>
<dd>a numeric vector</dd>

 <dt><code>DESeq</code></dt>
<dd>a numeric vector</dd>

 <dt><code>UQ</code></dt>
<dd>a numeric vector</dd>

 <dt><code>TMM</code></dt>
<dd>a numeric vector</dd>

 <dt><code>TU</code></dt>
<dd>a numeric vector</dd>

 <dt><code>NCS</code></dt>
<dd>a numeric vector</dd>

 <dt><code>ES</code></dt>
<dd>a numeric vector</dd>

 <dt><code>GAPDH</code></dt>
<dd>a numeric vector</dd>

 
</dl>

bkRNA18_factors: bkRNA18_factors

Description

Usage

Arguments

Format

Examples